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Pumpkin Whoopie Pies with Cream Cheese Filling

Refreshing Recipes by Refreshing Recipes
October 8, 2026
in Desserts
Reading Time: 7 mins read
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Pumpkin whoopie pies with cream cheese filling stacked on a white plate

Soft pumpkin cakes sandwiched with tangy cream cheese filling.

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Pumpkin Whoopie Pies with Cream Cheese Filling

Whoopie pies are pure joy in handheld form, and this pumpkin version might just be the happiest of them all. Two soft, pillowy pumpkin-spice cakes — tender like the best muffin top you have ever had — sandwiched around a thick layer of tangy cream cheese filling. They are playful, portable, and completely irresistible, the kind of treat that makes both kids and grown-ups light up.

The pumpkin cakes themselves are where the magic starts. Real pumpkin puree keeps them incredibly moist, while cinnamon, ginger, and nutmeg give them that warm, cozy spice flavor that tastes like fall in every bite. Unlike fussy layer cakes, the batter comes together in minutes with just a whisk, and the cakes bake up in about ten minutes flat.

Then there is the filling: a classic cream cheese frosting, but made slightly thicker so it holds its shape in the sandwich. The tang of the cream cheese against the sweet, spiced pumpkin is a combination that never gets old. These are perfect for bake sales, lunchboxes, Halloween parties, or any October afternoon that needs a little sweetness.

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Pumpkin whoopie pies with cream cheese filling stacked on a white plate

Why you’ll love this recipe

  • Soft, cake-like texture — tender pumpkin cakes that stay moist for days.
  • Tangy cream cheese filling — the perfect sweet-tart contrast to the spiced cakes.
  • No mixer required — the batter comes together with just a whisk and a bowl.
  • Perfectly portable — neat handheld treats for parties, lunchboxes, and bake sales.
  • Fall flavor bomb — real pumpkin plus warm spices in every single bite.

Ingredients

For the pumpkin cakes

  • 1 1/2 cups (180 g) all-purpose flour
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon ground ginger
  • 1/4 teaspoon ground nutmeg
  • 1/4 teaspoon fine salt
  • 1 cup (200 g) packed light brown sugar
  • 1/2 cup (120 ml) vegetable oil
  • 1 cup (245 g) pure pumpkin puree
  • 1 large egg, at room temperature
  • 1 teaspoon pure vanilla extract

For the cream cheese filling

  • 8 oz (226 g) cream cheese, at room temperature
  • 1/4 cup (57 g) unsalted butter, at room temperature
  • 2 cups (240 g) powdered sugar, sifted
  • 1 teaspoon pure vanilla extract
  • 1 pinch fine salt
Pumpkin puree, flour, spices, cream cheese, powdered sugar and butter laid out
Real pumpkin, warm spices and cream cheese for the filling.

Instructions

  1. Prep the oven and pans. Preheat the oven to 350°F (175°C). Line two baking sheets with parchment paper — the cakes release effortlessly from parchment, so do not skip it.
  2. Mix the dry ingredients. In a medium bowl, whisk together the flour, baking powder, baking soda, cinnamon, ginger, nutmeg, and salt until evenly combined.
  3. Mix the wet ingredients. In a large bowl, whisk the brown sugar and oil until smooth and combined. Whisk in the pumpkin puree, egg, and vanilla until the mixture is uniform and glossy.
  4. Combine. Add the dry ingredients to the wet and fold gently just until no flour streaks remain. The batter will be thick and scoopable, similar to a muffin batter.
  5. Scoop the cakes. Using a cookie scoop or two spoons, drop 2-tablespoon mounds of batter onto the prepared sheets, spacing them 2 inches apart. Smooth the tops slightly with damp fingertips for even, domed cakes.
  6. Bake. Bake for 10 to 12 minutes, until the tops spring back when lightly touched and the edges look set. Cool on the pan for 5 minutes, then transfer to a wire rack to cool completely. Warm cakes will melt the filling, so be patient.
  7. Make the filling. Beat the room-temperature cream cheese and butter on medium speed until completely smooth and fluffy, about 2 minutes. Beat in the sifted powdered sugar, vanilla, and salt until thick and creamy. If the filling seems soft, refrigerate it for 15 to 20 minutes to firm up.
  8. Assemble. Pair up the cooled cakes by size so each sandwich matches. Pipe or spread about 2 tablespoons of filling onto the flat side of one cake, then gently press its partner on top. Chill the assembled whoopie pies for 30 minutes to set the filling before serving.

Tips for success

  • Size matters. Uniform scoops mean cakes that pair up neatly. A cookie scoop is your best friend here.
  • Cool completely before filling. Even slightly warm cakes will melt the cream cheese filling into a slippery mess.
  • Sift the powdered sugar. Lumps in the sugar become lumps in the filling — a quick sift guarantees silkiness.
  • Chill to set. Thirty minutes in the fridge firms the filling so the sandwiches hold together when picked up.
  • Do not overbake. The cakes should be just set and springy. Overbaked cakes turn dry and crumbly instead of soft and cakey.

Variations

  • Maple filling: Replace the vanilla in the filling with 2 tablespoons of pure maple syrup (and reduce the powdered sugar by 2 tablespoons).
  • Chocolate whoopie pies: Swap the pumpkin cakes for chocolate ones — replace 1/4 cup (30 g) of the flour with cocoa powder and use 1 cup (240 ml) of milk instead of pumpkin.
  • Spiced filling: Add 1/2 teaspoon of cinnamon to the cream cheese filling for extra warmth.
  • Mini whoopie pies: Scoop 1-tablespoon mounds and bake 8 to 9 minutes for bite-sized party treats (makes about 24).
Hands piping cream cheese filling onto a soft pumpkin cake round
Piping the tangy cream cheese filling onto each pumpkin cake.

Storage and make-ahead

Because of the cream cheese filling, assembled whoopie pies must be refrigerated. Stored in an airtight container in the fridge, they keep for up to 5 days — and like many spiced bakes, the flavor gets even better on day two as the cakes absorb a little moisture from the filling.

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You can also freeze them: wrap each whoopie pie individually in plastic wrap, then store in a freezer bag for up to 2 months. Thaw in the refrigerator overnight. The unfilled cakes can be baked a day ahead and kept at room temperature, then filled the next day.

Frequently asked questions

Why are my whoopie pies flat? Flat cakes usually mean expired leavening or overmixed batter. Check that your baking powder and soda are fresh, and fold the flour in gently just until combined.

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Can I use pumpkin pie filling instead of pumpkin puree? No — pie filling contains added sugar and spices that will throw off the recipe’s balance. Use plain 100% pumpkin puree.

My filling is too runny. What went wrong? The cream cheese or butter was too warm, or the powdered sugar was under-measured. Chill the filling for 20 minutes to firm it up, and make sure to sift and properly measure the sugar.

Can I make these without a piping bag? Absolutely. A zip-top bag with the corner snipped works perfectly, or simply spread the filling with a small spatula or butter knife.

Recipe card

Prep time 25 minutes
Cook time 12 minutes
Total time 37 minutes (plus 30 minutes chilling)
Servings 12 whoopie pies
Calories per serving 340 kcal

Soft, spiced, and stuffed with tangy cream cheese filling, these pumpkin whoopie pies are fall’s most fun handheld dessert. For more pumpkin inspiration, start with our desserts collection — and if you are in the mood for something creamy and chocolatey instead, the easy tiramisu cups are always a hit.

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